Walker, A.K., Rymar, G., and Andrews, P.C. (2004)
Virtual 2-D Gel Electrophoresis by MALDI Mass Spectrometry,
The Proteomics Handbook (Walker, J.M., ed.), Humana, Totowa, NJ, in press.

Xuequn Chen; Chenwei Li; Tetsuro Izumi; Stephen A. Ernst; Philip C. Andrews; John A. Williams
Rab27b localizes to zymogen granules and regulates pancreatic acinar exocytosis,
Biochemical and Biophysical Research Communications 2004 323:1156-1161

Ge Y, Molloy MP, Chamberlain JS, Andrews PC.,
Proteomic analysis of mdx skeletal muscle: Great reduction of adenylate kinase 1 expression and enzymatic activity.
Proteomics. 3(10):1895-1903 (2003).

Misek DE, Kuick R, Wang H, Galchev V, Deng B, Zhao R, Tra J, Pisano MR, Amunugama R, Allen D, Walker AK, Strahler JR, Andrews PC, Omenn GS, Hanash SM:
A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system.
Proteomics. 5: 3343-3352, 2005.

Yamada K, Strahler JR, Andrews PC, Matthews RG.
Regulation of human methylenetetrahydrofolate reductase by phosphorylation.
Proc Natl Acad Sci U S A. 102: 10454-10459, 2005.

Chen X, Li C, Izumi T, Ernst SA, Andrews PC, Williams JA.
Rab27b localizes to zymogen granules and regulates pancreatic acinar exocytosis.
Biochem Biophys Res Commun. 2004 Oct 29;323(4):1157-62.

Falkner J, Andrews P.
Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
Bioinformatics. 2005 May 15;21(10):2177-84. Epub 2005 Mar 3

Ostrom, P.H., Schall, M., Ghandhi, H., Shen, T.-L., Hauschka, P.V., Strahler, J.R. and Gage, D.A.:
New strategies for characterizing ancient proteins using matrix-assisted laser esorption ionization mass spectrometry.
Geochimica et Cosmochimica Acta. 64: 1043-1050, 2000.

Ostrom, PH, Gandhi, H, Strahler, JR, Walker, AK, Andrews, PC, Leykam, J, Stafford, TW, Kelly, RK, Walker, DN, Buckley, M and Humpula,J.:
Unraveling the sequence and structure of the protein osteocalcin from a 42 ka fossil horse.
Geochimica et Cosmochimica Acta. (in press)

Keshamouni, V.G., Michailidi, G., Grasso, C.S., Anthwal, S., Strahler, J.R., Walker, A., Arenberg, D.A.,Reddy, R.C., Akulapalli, S., Thannickal, V.J., Standiford, T. J., Andrews, P.C. and Omenn, G.S.:
Differential Protein Expression Profiling by iTRAQ-2DLC-MS/MS Reveals a Metastatic Phenotype in TGF-induced Epithelial-Mesenchymal Transitions in Human Lung Cancer Cells.
Journal of Proteome Research. (in press).

Pacifico, S., Liu, G., Guest, S., Parrish, J.R., Fotouhi, F., and Finley, Jr., R.L.
A database and tool, IM Browser, for exploring and integrating
emerging gene and protein interaction data for Drosophila.
BMC Bioinformatics 7, 195, 2006.
Publication >>

Parrish, J.R., Gulyas, K.D., and Finley, JR., R.L.
Yeast two-hybrid contributions to interactome mapping.
Current Opin. Biotechnol. 17, 387-393, 2006.
Publication >>

Jafari-Khouzani, K., Soltanian-Zadeh, H., Fotouhi, F., Parrish, J.R., and Finley, Jr., R.L.
Automated scoring of high throughput yeast assays by neural network-based image analysis. In press. 2007

Parrish, J.R., Liu, G., Hines, J.A., Yu, J., Chan, J.E., Mangiola, B.A., Zhang, H., Pacifico, S., Fotouhi, F., DiRita, V.J., Ideker, T., Andrews, P. , and Finley, Jr., R.L.
A proteome-wide protein interaction map for Campylobacter jejuni. Genome Biology, in press.